Discover the Science Beneath the Surface

A coral reef is more than coral. A mangrove is more than trees. And a scientific dive is very different from simply going underwater and writing down what you see.

Explore & learn

Marine ecosystems are networks, not places

Coral reefs, mangrove forests, seagrass meadows and the open water around southwest Lombok are one connected system. Animals move between them to feed, breed and shelter, while nutrients, sediment, currents and human pressures cross every boundary we draw.

This is an introduction to the ecosystems, the marine life and the scientific methods you may meet at SORCE: enough to understand the science before you arrive. Learning to do it yourself, underwater, is what an expedition is for.

How the four habitats connect Mangroves Seagrass Coral reef Open water
Hover over or tap a line to see what moves between two habitats. Select a habitat to open its fact file.
Healthy coral reef with fish

Part one

Four habitats, one system

Choose a habitat to explore it. Understanding one of them usually means understanding what is happening in the others.

Coral Reefs

Cities beneath the sea

Coral reefs are among the most structurally complex marine ecosystems on Earth. Despite looking like colourful rocks, reef-building corals are animals: individual polyps, small soft-bodied invertebrates related to sea anemones, living in colonies, many of them producing the calcium carbonate skeletons that build the reef itself.

Inside the tissues of many corals live tiny algae called zooxanthellae. Like plants, they use sunlight to make food, and they pass much of it to the coral. That partnership supplies much of the coral’s energy, and it is a large part of why reefs are so productive in tropical water that is otherwise nutrient-poor. When corals are stressed by heat they lose these algae and turn white, which is what we call bleaching.

But corals are only the architects. The reef supports fishes, crustaceans, molluscs, echinoderms, sponges, algae and countless microorganisms, interacting as predators, prey, competitors, grazers, cleaners and engineers.

Wide healthy reef with plate and massive corals

Why it matters

Biodiversity
Branches, ledges and crevices give an extraordinary range of animals somewhere to feed, shelter and breed, so the more complex the reef, the more life it holds.
Fisheries
Many of the fish that coastal families eat and sell feed and breed on reefs, so a healthy reef means more fish to catch.
Coastal protection
Reefs soak up wave energy before it reaches the shore, helping reduce the erosion of shorelines and the homes along them.
Livelihoods
Fishing, diving and tourism all depend on a living reef, so its health is tied directly to local jobs and income.

Under pressure

  • Ocean warming
  • Coral bleaching
  • Ocean acidification
  • Sedimentation
  • Pollution
  • Destructive fishing
  • Overfishing
  • Physical damage
  • Disease
  • Crown-of-thorns outbreaks

At SORCE

Coral reefs are a major part of our research and conservation work inside the GITA NADA Marine Protected Area. Long-term monitoring looks at reefs across different locations and depths, tracking coral cover, substrate, fish and invertebrate communities and overall condition.

Our coral reef conservation
An illustrated cross-section of the coast: mangrove forest with crabs and mudskippers among its roots, a seagrass meadow with a turtle and a seahorse, a coral reef crowded with fish, and open water beyond with a shark, a manta ray and tuna - one continuous stretch of sea.
Marine species do not recognise the boundaries we draw on maps. A fish met on the reef as an adult may have spent its first months among mangrove roots.

Part two

Who lives here?

A short library of the groups you are most likely to meet, and what makes each one worth knowing. Enough to recognise something. Not enough to survey it: that takes training.

Identifying corals: start with growth form

  • BranchingTree-like branches
  • MassiveSolid boulders and domes
  • SubmassiveKnobs and stubby columns
  • EncrustingA thin layer over rock
  • FolioseThin, leaf-like plates
  • TabularFlat tables on a central stalk
Growth form is the first thing to look at, before the finer detail of the polyps and skeleton. Shape is a clue, not an identification: a single species can change form with depth, light and water movement.

Part three

How do we study the ocean?

Seeing something underwater is one thing. Recording it scientifically is another. Standardised methods are what let an observation made at one site, depth or year be compared with another.

  1. The question
  2. The method
  3. The data
  4. The analysis
  5. The evidence
  6. Better conservation decisions

BRUV

Baited Remote Underwater Video

Divers place a video camera on the seabed, then leave the area. It is one of the most exciting things you will do on an expedition. Bait draws scavengers and predators into view, so animals that rarely appear on diver surveys are recorded reliably.

What it can tell us

  • Species presence
  • Relative abundance
  • Community composition
  • Predators and scavengers
  • Sharks and rays
  • Differences between sites and habitats
Think like a scientist

Why might a shark behave differently around an unattended camera than around a group of divers?

See an answer

Divers are large, noisy and breathe out streams of bubbles, and many sharks keep their distance. With nobody there and bait in the water, they come much closer, so the camera records animals divers would rarely see.

UPT

Underwater Photo Transects

A photographic record of the seabed along a standardised survey area. Rather than trying to record everything while underwater, images are collected systematically and analysed later, and the record is permanent. Each photograph can be scored for what covers the seabed beneath it.

What it can tell us

  • Hard coral
  • Soft coral
  • Algae
  • Rubble
  • Sand and silt
  • Other benthic categories
Think like a scientist

What might a photograph reveal five years from now that nobody was looking for at the time?

See an answer

An early sign of disease or bleaching, a species nobody could identify then, or a change that only makes sense next to later photographs. Because the image is kept, it can be checked again with new questions.

DOV

Diver-Operated Video

Video collected by a diver swimming a set route through a defined survey area. Rather than relying on notes made underwater, it leaves a permanent record of what was encountered, which can be reviewed, re-counted and checked long after the dive. Because the camera moves with the diver, it covers far more ground than a fixed camera can.

What it can tell us

  • Fish communities
  • Mobile species
  • Habitat as the diver passes through it
  • Observations that can be re-checked by someone else
Think like a scientist

What might the diver's presence change about the fish that end up on the video?

See an answer

Shy fish may hide or swim off before the camera reaches them, while curious ones may come closer. So the video can under-count some species and over-count others, which is why the method is kept the same every time.

Belt transect

Counting along a defined area

Surveying organisms within a defined strip of habitat. Standardising the area searched is what lets abundance be compared between locations or between years.

What it can tell us

  • Invertebrates
  • Sea cucumbers, urchins and clams
  • Larger mobile invertebrates
  • Anything where density matters more than presence
Think like a scientist

Finding 20 sea cucumbers means very little on its own. Why?

See an answer

Because it depends how much ground was searched. Twenty in a small strip is a lot; twenty across a whole reef is very few. Counting within a set area turns a number into a density that can be compared.

Quadrat

A window onto the seabed

A small standardised area within which organisms or substrate are recorded. Used across ecology, because it allows a fraction of a much larger habitat to be sampled systematically.

What it can tell us

  • Benthic communities
  • Seagrass
  • Mangrove sediment and seedlings
  • Anything too fine-grained to survey across a whole site
Think like a scientist

Why does the size of the square matter when comparing two different sites?

See an answer

A bigger square catches more species simply because it covers more ground. If two sites were surveyed with different squares, the difference in results could come from the square, not the reef.

Point intercept

What lies beneath the line?

At set points along a transect, whatever sits directly beneath the point is recorded into a category. Across enough points, those records describe the composition of the seabed.

What it can tell us

  • Benthic cover
  • Substrate categories
  • Change between survey periods
Think like a scientist

Would ten points along the line give you a true picture of the reef? How would you know when you had recorded enough?

See an answer

Ten points could all land on sand, or all on coral, just by chance. The more points you record, the closer the result gets to the real cover. You have enough when adding more barely changes the percentages.

Spot counts

A snapshot of a community

Recording what is observed from a defined location, area or period of time. Simple in appearance and complex in practice: observer skill, animal behaviour, visibility and design all shape what ends up on the slate.

What it can tell us

  • Species abundance
  • Diversity
  • Community composition
  • Rapid assessment
Think like a scientist

If two divers have different identification skills, could they produce different results on the same reef?

See an answer

Yes. A less experienced diver may miss small or camouflaged species, or mix up similar ones. That is why identification training matters so much before anyone surveys.

Photo ID

When markings become fingerprints

Some animals carry unique natural markings, allowing us to identify individuals. Photographs become a catalogue, and the catalogue answers questions a single sighting never could.

What it can tell us

  • Who returns
  • How often
  • Where they are seen
  • How long they stay in an area
Think like a scientist

Which markings would you trust to tell one animal from another years apart?

See an answer

Ones that stay the same for life, such as the spot pattern on a manta ray's belly or the scales on a turtle's face. Scars and nicks help too, but new ones appear and old ones fade.

Environmental sampling

When the answer isn't visible

Not every change underwater can be seen. Measurements and samples allow us to analyse the physical and chemical setting organisms live in, so ecological patterns can be explained, not just described.

What it can tell us

  • Temperature
  • Water characteristics
  • Sediment
  • Nutrients and pH
  • Pollution
Think like a scientist

How might the water temperature on survey day shape everything else you record?

See an answer

Temperature affects which animals are active, where fish gather and whether corals are stressed. Without it, a change in the survey results could be put down to the wrong cause.

Try it

Which method would you choose?

Five real research questions. Pick the method you would use - there is more than one defensible answer to some of these.

  1. You want to investigate coral cover across several reef sites.
  2. You want to detect sharks without divers in the survey area.
  3. You want to quantify large invertebrates across a defined area.
  4. You want a permanent video record of the fish along a survey route.
  5. You want to know whether the same manta ray returns to an area.

Part four

How do we help a reef recover?

Where a reef has been damaged, corals often need something solid to grow on again. We build several kinds of structure, and which one goes where depends on the shape and depth of the reef.

  • On slopes

    MARS blocks

    Concrete blocks that give corals a stable base to be planted onto. On a slope they do a second job too. Laid in rows across the slope, they form low walls that stop loose rubble sliding downhill. Once it stays put, coralline algae grows over the rubble and cements it together, giving the reef firm ground to recover on, both naturally and with our help.

  • On flatter ground

    Spider frames

    Large steel frames with plenty of places to attach coral. Laid side by side, they join up into one big framework that covers a wide area of seabed.

  • In shallow gaps

    Box frames

    Low frames for filling smaller holes in the reef. Because they sit low, they suit shallow spots like the reef crest, where anything taller could be a danger to passing boats.

  • A little deeper

    Triangle frames

    Like box frames, but taller, so they can go a little deeper. Their shape means they sit well on sloping ground as well as flat.

Our artificial reef work

Where next

From curiosity to field science

Reading about marine science is a good place to start. Doing it is different: recognising organisms underwater, deploying equipment properly, following a protocol and understanding what the numbers mean.

  1. Start here

    New to marine conservation?

    Discover the ecosystems and take part in hands-on conservation.

    Eco-Venture
  2. Build your skills

    Studying marine science?

    Build practical field and survey experience alongside our team.

    Conservation Research Assistant
  3. Lead the science

    Developing a research career?

    Advanced placements, independent research and field experience.

    Scientific Field Placement

No single survey tells us everything. Understanding an ecosystem means bringing different kinds of evidence together, and that is exactly what you will learn to do.

The ocean gets more interesting the more you understand it